Here is what works for me. Adjust the body side of the hinge to get the fore-aft gap at the quarter and the up/down gap at the rocker first. Once you are happy with those gaps, then loosen 2 of the bolts on the door side of the hinge a couple of turns, but only slightly loosen the 3rd bolt. You can then take a dead-blow hammer and tap outward on the inside of the door enough to move it out to the proper plane. Keep in mind, that getting the lower hinge is easy because you have the rocker to align it with, but the upper hinge requires the fender to be mounted to have something to align it with. You can not rely on the vent window frame to align with, since it also moves independently from the door with an adjusting screw, both fore and aft as well as in an out. The key is to get the last bolt loose enough to move with a hard blow from your fist or a deadblow hammer, but not loose enough to move around on it's own while you tighten the screws.